Gene detail

Detailed information of OS493_015324-T1 in Lophelia pertusa

Genomic Location: scaffold_45:1478202...1546087
NR annotation: KAJ7379533.1, hypothetical protein OS493_015324 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
J9VHE9	UHRF1-like protein OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=UHF1 PE=3 SV=2
Q8VDF2	E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus OX=10090 GN=Uhrf1 PE=1 SV=2
Q7TPK1	E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus OX=10116 GN=Uhrf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02182 all species →	SAD_SRA	SAD/SRA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036987 all species →	Homologous_superfamily	SRA-YDG superfamily	Interproscan
IPR045134 all species →	Family	UHRF1/2-like	Interproscan
IPR003105 all species →	Domain	SRA-YDG	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14140 all species →	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010216 all species →	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10638	UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015324-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

58.3Max TPM

24.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.35	42.32
polyp at pH7 6	18	18	32.68	39.43
coral polyp · control treatment	16	16	21.38	32.47
coral polyp · oil and dispersant treatment	16	16	14.82	39.71
coral polyp · oil treatment	16	16	20.27	34.45
coral polyp · dispersant treatment	16	16	19.64	46.31
Polyp	10	10	32.60	58.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	58.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	39.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	39.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.