Detailed information of OS493_015340-T1 in Lophelia pertusa

Genomic Location: scaffold_45:1930449...1971224
NR annotation: KAJ7379545.1, Nuclear pore complex protein Nup54 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z3B4Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2
Q8BTS4Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1
P70582Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006758 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_015340-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR024864
all species →		FamilyNucleoporin Nup54/Nup57/Nup44Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13000
all species →		NUCLEOPORIN P54Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005643
all species →		Cellular Componentnuclear poreInterproscan
GO:0006607
all species →		Biological ProcessNLS-bearing protein import into nucleusInterproscan
GO:0006999
all species →		Biological Processnuclear pore organizationInterproscan
GO:0017056
all species →		Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0036228
all species →		Biological Processprotein localization to nuclear inner membraneInterproscan
GO:0044613
all species →		Cellular Componentnuclear pore central transport channelInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_015340-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_015340-T1 global co-expression network
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