Gene detail

Detailed information of OS493_015371-T1 in Lophelia pertusa

Genomic Location: scaffold_46:553071...554873
NR annotation: KAJ7372916.1, Neuferricin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AY62	Neuferricin OS=Rattus norvegicus OX=10116 GN=Cyb5d2 PE=2 SV=1
Q5SSH8	Neuferricin OS=Mus musculus OX=10090 GN=Cyb5d2 PE=1 SV=1
Q8WUJ1	Neuferricin OS=Homo sapiens OX=9606 GN=CYB5D2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009260 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR050577 all species →	Family	Cytochrome b5/MAPR and VMP1 families	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10281 all species →	MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015371-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015371-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

27.7Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.92	6.77
polyp at pH7 6	18	18	5.89	12.89
coral polyp · control treatment	16	16	8.41	17.23
coral polyp · oil and dispersant treatment	16	16	12.50	27.66
coral polyp · oil treatment	16	16	6.16	11.33
coral polyp · dispersant treatment	16	15	5.88	13.38
Polyp	10	9	2.73	7.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.