Detailed information of OS493_015384-T1 in Lophelia pertusa

Genomic Location: scaffold_46:869433...871656
NR annotation: KAJ7372929.1, MutS protein 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3YSJ8DNA mismatch repair protein MutS OS=Ehrlichia canis (strain Jake) OX=269484 GN=mutS PE=3 SV=1
Q2GG13DNA mismatch repair protein MutS OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=mutS PE=3 SV=1
Q28VY6DNA mismatch repair protein MutS OS=Jannaschia sp. (strain CCS1) OX=290400 GN=mutS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005817 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01624
all species →		MutS_IMutS domain IDomainInterproscan
PF05188
all species →		MutS_IIMutS domain IIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036678
all species →		Homologous_superfamilyMutS, connector domain superfamilyInterproscan
IPR045076
all species →		FamilyDNA mismatch repair MutS familyInterproscan
IPR007695
all species →		DomainDNA mismatch repair protein MutS-like, N-terminalInterproscan
IPR016151
all species →		Homologous_superfamilyDNA mismatch repair protein MutS, N-terminalInterproscan
IPR007860
all species →		DomainDNA mismatch repair protein MutS, connector domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11361
all species →		DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006298
all species →		Biological Processmismatch repairInterproscan
GO:0030983
all species →		Molecular Functionmismatched DNA bindingInterproscan
GO:0003690
all species →		Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0043504
all species →		Biological Processmitochondrial DNA repairInterproscan
GO:0140664
all species →		Molecular FunctionATP-dependent DNA damage sensor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_015384-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_015384-T1 global co-expression network
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