Gene detail

Detailed information of OS493_015397-T1 in Lophelia pertusa

Genomic Location: scaffold_46:1186802...1191795
NR annotation: KAJ7372939.1, hypothetical protein OS493_015397 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WWF8	Calcyphosin-like protein OS=Homo sapiens OX=9606 GN=CAPSL PE=1 SV=4
Q6P8Y1	Calcyphosin-like protein OS=Mus musculus OX=10090 GN=Capsl PE=2 SV=4
P10463	Calcyphosin OS=Canis lupus familiaris OX=9615 GN=CAPS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001669 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051581 all species →	Family	Calcium-Binding Signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34524 all species →	CALCYPHOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23909	CAPS; calcyphosin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015397-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

57.5Max TPM

16.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.04	17.29
polyp at pH7 6	18	17	9.35	18.83
coral polyp · control treatment	16	16	25.69	57.52
coral polyp · oil and dispersant treatment	16	16	16.80	25.15
coral polyp · oil treatment	16	16	19.49	30.11
coral polyp · dispersant treatment	16	16	18.21	30.13
Polyp	10	10	15.80	43.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	43.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.