Gene detail

Detailed information of OS493_015406-T1 in Lophelia pertusa

Genomic Location: scaffold_46:1437001...1479236
NR annotation: KAJ7372945.1, Epoxide hydrolase 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IUS5	Epoxide hydrolase 4 OS=Homo sapiens OX=9606 GN=EPHX4 PE=1 SV=2
G5EBI4	Epoxide hydrolase 1 OS=Caenorhabditis elegans OX=6239 GN=ceeh-1 PE=1 SV=1
Q6IE26	Epoxide hydrolase 4 OS=Mus musculus OX=10090 GN=Ephx4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002678 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00561 all species →	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000639 all species →	Family	Epoxide hydrolase-like	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43329 all species →	EPOXIDE HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22369	EPHX4; epoxide hydrolase 4	EC:3.3.-.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015406-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

84.6Max TPM

46.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	49.95	63.61
polyp at pH7 6	18	18	55.69	84.63
coral polyp · control treatment	16	16	46.55	78.40
coral polyp · oil and dispersant treatment	16	16	39.51	72.53
coral polyp · oil treatment	16	16	51.99	80.27
coral polyp · dispersant treatment	16	16	34.79	67.68
Polyp	10	10	42.74	71.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	71.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	62.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	53.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	33.67
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.83

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.