Gene detail

Detailed information of OS493_015419-T1 in Lophelia pertusa

Genomic Location: scaffold_46:1588817...1596224
NR annotation: KAJ7372956.1, hypothetical protein OS493_015419 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CY27	Very-long-chain enoyl-CoA reductase OS=Mus musculus OX=10090 GN=Tecr PE=1 SV=1
Q64232	Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus OX=10116 GN=Tecr PE=1 SV=1
Q3ZCD7	Very-long-chain enoyl-CoA reductase OS=Bos taurus OX=9913 GN=TECR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005144 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21696 all species →	TECR_N	TECR, ubiquitin-like domain	Domain	Interproscan
PF02544 all species →	Steroid_dh	3-oxo-5-alpha-steroid 4-dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039357 all species →	Family	3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase	Interproscan
IPR049127 all species →	Domain	TECR-like, N-terminal domain	Interproscan
IPR001104 all species →	Domain	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10556 all species →	3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0042761 all species →	Biological Process	very long-chain fatty acid biosynthetic process	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10258	TER, TSC13, CER10; very-long-chain enoyl-CoA reductase	EC:1.3.1.93	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015419-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

43.7Max TPM

19.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.18	24.48
polyp at pH7 6	18	17	18.24	28.51
coral polyp · control treatment	16	16	24.97	43.69
coral polyp · oil and dispersant treatment	16	15	17.92	37.70
coral polyp · oil treatment	16	16	23.76	36.47
coral polyp · dispersant treatment	16	16	19.61	34.98
Polyp	10	10	13.94	19.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.