Gene detail

Detailed information of OS493_015450-T1 in Lophelia pertusa

Genomic Location: scaffold_46:2030585...2031607
NR annotation: KAJ7372981.1, hypothetical protein OS493_015450 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05412	Transcription factor Jun OS=Homo sapiens OX=9606 GN=JUN PE=1 SV=2
P18870	Transcription factor Jun OS=Gallus gallus OX=9031 GN=JUN PE=1 SV=2
O77627	Transcription factor Jun OS=Bos taurus OX=9913 GN=JUN PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001571 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03957 all species →	Jun	Jun-like transcription factor	Family	Interproscan
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050946 all species →	Family	AP-1 Transcription Factor bZIP	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR005643 all species →	Domain	Jun-like transcription factor	Interproscan
IPR002112 all species →	Family	Transcription factor Jun	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11462 all species →	JUN TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04448	JUN; transcription factor AP-1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015450-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

4,399.1Max TPM

468.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.55	41.03
polyp at pH7 6	18	18	36.30	44.97
coral polyp · control treatment	16	16	171.03	378.19
coral polyp · oil and dispersant treatment	16	16	425.70	803.69
coral polyp · oil treatment	16	16	181.05	306.42
coral polyp · dispersant treatment	16	16	2,191.80	4,399.05
Polyp	10	10	281.41	1,387.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.41
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	378.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	356.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	337.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	259.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	236.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	222.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	803.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	720.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	577.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	564.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	494.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	448.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	415.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	390.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	363.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	359.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	359.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	333.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	317.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	298.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	206.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	306.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	269.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	240.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	235.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	231.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	222.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	218.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	179.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	178.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	177.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	152.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,399.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,649.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,344.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,222.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,845.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,657.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,518.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,325.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,939.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,825.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,754.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,575.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,363.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	927.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	513.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	205.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,387.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	616.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	524.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	75.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	59.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.