Gene detail

Detailed information of OS493_015537-T1 in Lophelia pertusa

Genomic Location: scaffold_47:332847...334533
NR annotation: KAJ7360436.1, 1-acylglycerol-3-phosphate O-acyltransferase abhd5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EE05	1-acylglycerol-3-phosphate O-acyltransferase ABHD5 OS=Sus scrofa OX=9823 GN=ABHD5 PE=2 SV=1
Q9DBL9	1-acylglycerol-3-phosphate O-acyltransferase ABHD5 OS=Mus musculus OX=10090 GN=Abhd5 PE=1 SV=1
Q6QA69	1-acylglycerol-3-phosphate O-acyltransferase ABHD5 OS=Rattus norvegicus OX=10116 GN=Abhd5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001407 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00561 all species →	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42886 all species →	RE40534P-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0006654 all species →	Biological Process	phosphatidic acid biosynthetic process	Interproscan
GO:0042171 all species →	Molecular Function	lysophosphatidic acid acyltransferase activity	Interproscan
GO:0052689 all species →	Molecular Function	carboxylic ester hydrolase activity	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015537-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015537-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,223.9Max TPM

218.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.61	25.05
polyp at pH7 6	18	18	17.18	31.30
coral polyp · control treatment	16	16	91.30	211.46
coral polyp · oil and dispersant treatment	16	16	347.02	1,114.60
coral polyp · oil treatment	16	16	109.49	451.88
coral polyp · dispersant treatment	16	16	882.69	2,223.86
Polyp	10	10	62.59	264.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	211.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	184.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	140.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,114.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	775.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	566.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	484.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	442.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	300.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	291.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	278.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	233.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	197.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	137.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	451.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,223.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,304.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,266.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,203.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,083.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	913.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	900.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	871.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	853.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	816.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	644.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	552.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	521.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	471.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	268.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	224.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	264.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	144.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	47.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	42.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.