Gene detail

Detailed information of OS493_015553-T1 in Lophelia pertusa

Genomic Location: scaffold_47:463707...465551
NR annotation: KAJ7360452.1, hypothetical protein OS493_015553 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010666 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12736 all species →	CABIT	Cell-cycle sustaining, positive selection,	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR025946 all species →	Domain	CABIT domain	Interproscan
IPR052281 all species →	Family	GRB2-associated and regulator of MAPK	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14454 all species →	GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015553-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

25.8Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.98	16.60
polyp at pH7 6	18	18	9.42	19.09
coral polyp · control treatment	16	16	9.75	25.85
coral polyp · oil and dispersant treatment	16	16	3.20	7.61
coral polyp · oil treatment	16	16	7.22	15.32
coral polyp · dispersant treatment	16	16	3.98	11.74
Polyp	10	10	6.47	14.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.