Gene detail

Detailed information of OS493_015564-T1 in Lophelia pertusa

Genomic Location: scaffold_47:545865...552622
NR annotation: KAJ7360463.1, hypothetical protein OS493_015564 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66JZ4	T-cell activation inhibitor, mitochondrial OS=Mus musculus OX=10090 GN=TCAIM PE=1 SV=1
P0DKR2	T-cell activation inhibitor, mitochondrial OS=Rattus norvegicus OX=10116 GN=Tcaim PE=2 SV=1
Q8N3R3	T-cell activation inhibitor, mitochondrial OS=Homo sapiens OX=9606 GN=TCAIM PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008700 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14688 all species →	DUF4461	Domain of unknown function (DUF4461)	Family	Interproscan
PF14687 all species →	DUF4460	Domain of unknown function (DUF4460)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027989 all species →	Domain	Domain of unknown function DUF4461	Interproscan
IPR028031 all species →	Domain	Domain of unknown function DUF4460	Interproscan
IPR027986 all species →	Family	T-cell activation inhibitor, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31596 all species →	T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015564-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015564-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

791.1Max TPM

78.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.99	30.37
polyp at pH7 6	18	18	19.33	28.60
coral polyp · control treatment	16	16	54.39	218.96
coral polyp · oil and dispersant treatment	16	16	106.33	244.52
coral polyp · oil treatment	16	16	31.58	48.06
coral polyp · dispersant treatment	16	16	302.11	791.08
Polyp	10	10	10.16	26.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	218.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	791.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	588.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	479.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	456.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	433.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	361.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	322.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	272.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	244.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	203.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	164.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.