Gene detail

Detailed information of OS493_015630-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1173671...1179158
NR annotation: KAJ7360528.1, Metallophosphoesterase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1WC86	Metallophosphoesterase 1 OS=Rattus norvegicus OX=10116 GN=Mppe1 PE=2 SV=1
C7G3A0	Metallophosphoesterase 1 OS=Cricetulus griseus OX=10029 GN=MPPE1 PE=2 SV=1
Q80XL7	Metallophosphoesterase 1 OS=Mus musculus OX=10090 GN=Mppe1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR033308 all species →	Family	PGAP5/Cdc1/Ted1	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR039541 all species →	Domain	Metallophosphoesterase 1, metallophosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13315 all species →	METALLO PHOSPHOESTERASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23362	MPPE1, PGAP5; ethanolamine phosphate phosphodiesterase	EC:3.1.-.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015630-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

25.5Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.27	16.77
polyp at pH7 6	18	18	14.75	19.63
coral polyp · control treatment	16	16	13.32	19.52
coral polyp · oil and dispersant treatment	16	16	14.43	25.50
coral polyp · oil treatment	16	16	12.67	22.59
coral polyp · dispersant treatment	16	16	7.06	14.64
Polyp	10	10	10.95	23.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.44

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.