Gene detail

Detailed information of OS493_015631-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1184436...1186669
NR annotation: KAJ7360529.1, hypothetical protein OS493_015631 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93477	Adenosylhomocysteinase B OS=Xenopus laevis OX=8355 GN=ahcy-b PE=2 SV=1
P51893	Adenosylhomocysteinase A OS=Xenopus laevis OX=8355 GN=ahcy-a PE=2 SV=1
Q3MHL4	Adenosylhomocysteinase OS=Bos taurus OX=9913 GN=AHCY PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan
PF00670 all species →	AdoHcyase_NAD	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR015878 all species →	Domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004013 all species →	Molecular Function	adenosylhomocysteinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015631-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015631-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

12,136.8Max TPM

6,327.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9,127.62	12,136.81
polyp at pH7 6	18	18	9,680.80	11,673.77
coral polyp · control treatment	16	16	4,894.58	7,833.78
coral polyp · oil and dispersant treatment	16	16	4,523.00	5,825.34
coral polyp · oil treatment	16	16	5,518.17	7,709.64
coral polyp · dispersant treatment	16	16	3,502.77	6,882.29
Polyp	10	10	6,242.82	9,628.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12,136.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12,088.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10,809.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10,774.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9,329.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9,293.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,864.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,856.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,725.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,686.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,468.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,437.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,252.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,252.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,894.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,870.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,806.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,749.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,673.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,644.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,320.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,255.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,079.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11,005.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10,522.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10,448.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9,440.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9,400.15
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,979.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,966.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,904.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,892.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,442.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,337.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,991.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,949.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7,833.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,543.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,090.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,816.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,721.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,072.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,060.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,918.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,503.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,426.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,202.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,192.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,041.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,587.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,415.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,886.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,825.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,816.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,788.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,660.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,923.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,782.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,668.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,626.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,550.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,120.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,995.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,985.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,528.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,520.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,401.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,173.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7,709.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7,453.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,296.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,115.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,896.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,763.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,762.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,663.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,634.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,435.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,998.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,920.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,539.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,534.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,927.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,639.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,882.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,026.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,006.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,893.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,866.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,675.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,551.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,241.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,160.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,118.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,046.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,038.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,890.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,712.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,595.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,338.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9,628.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8,180.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7,430.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7,053.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6,382.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5,521.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5,321.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4,515.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4,473.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3,920.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.