Gene detail

Detailed information of OS493_015632-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1186732...1192925
NR annotation: KAJ7360530.1, hypothetical protein OS493_015632 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27580	Adenosylhomocysteinase OS=Drosophila melanogaster OX=7227 GN=Ahcy PE=1 SV=2
P27604	Adenosylhomocysteinase OS=Caenorhabditis elegans OX=6239 GN=ahcy-1 PE=3 SV=1
O93477	Adenosylhomocysteinase B OS=Xenopus laevis OX=8355 GN=ahcy-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001227 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR020082 all species →	Conserved_site	S-adenosyl-L-homocysteine hydrolase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004013 all species →	Molecular Function	adenosylhomocysteinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015632-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015632-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

9,771.3Max TPM

5,258.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6,527.86	9,771.26
polyp at pH7 6	18	18	7,079.74	8,872.12
coral polyp · control treatment	16	16	4,934.13	7,273.23
coral polyp · oil and dispersant treatment	16	16	4,710.38	6,070.91
coral polyp · oil treatment	16	16	5,419.32	8,262.40
coral polyp · dispersant treatment	16	16	3,572.29	7,317.31
Polyp	10	10	3,529.12	6,831.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9,771.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9,711.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,689.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8,679.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,773.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,704.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,221.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,149.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,029.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,996.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,956.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,939.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,344.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,229.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,213.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,135.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,978.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,976.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,872.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,851.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,660.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,640.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,301.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8,275.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7,999.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7,954.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7,136.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7,042.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,979.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,918.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,448.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,404.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,075.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,061.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,421.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,391.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7,273.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,345.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,129.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,968.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,928.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,895.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,987.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,771.24
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,640.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,456.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,376.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,082.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,894.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,602.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,359.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,234.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6,070.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,991.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,722.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,494.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,323.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,278.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,048.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,880.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,859.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,720.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,029.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,980.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,746.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,616.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,339.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,263.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8,262.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,800.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,489.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,374.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,267.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,250.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,246.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,901.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,473.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,056.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,949.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,754.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,286.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,047.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,874.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,673.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,317.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,814.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,489.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,464.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,343.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,017.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,520.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,442.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,419.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,382.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,338.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,863.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,609.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,483.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,324.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,324.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6,831.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5,623.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4,763.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3,998.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3,498.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2,670.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2,472.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2,462.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,570.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,399.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.