Gene detail

Detailed information of OS493_015654-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1416456...1417309
NR annotation: KAJ7360550.1, Oxidative stress-induced growth inhibitor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UJX0	Oxidative stress-induced growth inhibitor 1 OS=Homo sapiens OX=9606 GN=OSGIN1 PE=1 SV=4
Q8VC10	Oxidative stress-induced growth inhibitor 1 OS=Mus musculus OX=10090 GN=Osgin1 PE=2 SV=1
Q9Y236	Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens OX=9606 GN=OSGIN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13738 all species →	Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029731 all species →	Family	OKL38 family	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15192 all species →	PROTEIN CBG05349	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_015654-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015654-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015654-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

496.4Max TPM

173.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	117.16	264.81
polyp at pH7 6	18	18	96.07	194.95
coral polyp · control treatment	16	16	216.64	320.18
coral polyp · oil and dispersant treatment	16	16	285.56	496.40
coral polyp · oil treatment	16	16	213.80	305.79
coral polyp · dispersant treatment	16	16	157.63	261.93
Polyp	10	10	123.07	229.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	264.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	260.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	177.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	174.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.01
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	320.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	298.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	237.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	234.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	234.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	225.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	224.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	212.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	205.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	198.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	496.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	432.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	383.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	358.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	331.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	321.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	320.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	288.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	287.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	273.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	200.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	305.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	290.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	259.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	244.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	244.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	238.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	232.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	226.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	225.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	182.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	182.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	175.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	261.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	251.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	215.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	203.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	229.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	204.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	152.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	147.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	115.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	103.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	83.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	72.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	64.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	58.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.