Gene detail

Detailed information of OS493_015655-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1417526...1420153
NR annotation: KAJ7360551.1, Oxidative stress-induced growth inhibitor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y236	Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens OX=9606 GN=OSGIN2 PE=1 SV=1
Q8VC10	Oxidative stress-induced growth inhibitor 1 OS=Mus musculus OX=10090 GN=Osgin1 PE=2 SV=1
Q9UJX0	Oxidative stress-induced growth inhibitor 1 OS=Homo sapiens OX=9606 GN=OSGIN1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003640 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_015655-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR029731 all species →	Family	OKL38 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15192 all species →	PROTEIN CBG05349	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_015655-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015655-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015655-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

423.0Max TPM

164.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	130.83	303.10
polyp at pH7 6	18	18	105.91	191.47
coral polyp · control treatment	16	16	204.51	365.90
coral polyp · oil and dispersant treatment	16	16	258.44	423.05
coral polyp · oil treatment	16	16	181.78	249.62
coral polyp · dispersant treatment	16	16	157.21	271.39
Polyp	10	10	96.79	189.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	303.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	298.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	165.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	152.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	139.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	136.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	191.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	185.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	180.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	107.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	365.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	297.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	254.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	243.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	234.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	204.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	201.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	201.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	183.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	167.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	423.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	333.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	333.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	331.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	324.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	291.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	284.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	263.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	249.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	223.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	205.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	183.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	168.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	249.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	218.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	218.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	212.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	207.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	206.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	204.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	173.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	154.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	271.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.06
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	230.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	227.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	189.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	141.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	133.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	99.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	90.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	88.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	84.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	47.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	45.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.