Gene detail

Detailed information of OS493_015665-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1506662...1512828
NR annotation: KAJ7360561.1, hypothetical protein OS493_015665 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80W93	Hydrocephalus-inducing protein OS=Mus musculus OX=10090 GN=Hydin PE=1 SV=2
Q4G0P3	Hydrocephalus-inducing protein homolog OS=Homo sapiens OX=9606 GN=HYDIN PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002250 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17213 all species →	Hydin_ADK	Hydin Adenylate kinase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033305 all species →	Family	Hydrocephalus-inducing-like	Interproscan
IPR033768 all species →	Domain	Hydin adenylate kinase-like domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23053 all species →	DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:1904158 all species →	Biological Process	axonemal central apparatus assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015665-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015665-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

39.1Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.36	7.29
polyp at pH7 6	18	17	2.80	5.02
coral polyp · control treatment	16	16	8.30	39.05
coral polyp · oil and dispersant treatment	16	16	6.77	26.55
coral polyp · oil treatment	16	16	5.35	11.15
coral polyp · dispersant treatment	16	16	5.88	12.73
Polyp	10	6	0.66	1.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.