Gene detail

Detailed information of OS493_015668-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1522068...1522528
NR annotation: KAJ7360564.1, hypothetical protein OS493_015668 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4G0P3	Hydrocephalus-inducing protein homolog OS=Homo sapiens OX=9606 GN=HYDIN PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002250 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_015668-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR033305 all species →	Family	Hydrocephalus-inducing-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23053 all species →	DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:1904158 all species →	Biological Process	axonemal central apparatus assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015668-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015668-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

67.0Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	7.25	15.77
polyp at pH7 6	18	16	4.72	8.47
coral polyp · control treatment	16	16	14.00	59.00
coral polyp · oil and dispersant treatment	16	16	12.16	67.00
coral polyp · oil treatment	16	16	10.14	22.67
coral polyp · dispersant treatment	16	14	8.04	16.50
Polyp	10	9	2.47	4.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.