Gene detail

Detailed information of OS493_015698-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1975087...1979233
NR annotation: KAJ7360590.1, hypothetical protein OS493_015698 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O23299	Enoyl-CoA delta isomerase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ECI2 PE=1 SV=1
O23300	Enoyl-CoA delta isomerase 3 OS=Arabidopsis thaliana OX=3702 GN=ECI3 PE=1 SV=1
O04469	Enoyl-CoA delta isomerase 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ECI1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009308 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11941 all species →	ENOYL-COA HYDRATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004165 all species →	Molecular Function	delta(3)-delta(2)-enoyl-CoA isomerase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015698-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015698-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.9Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.63	12.86
polyp at pH7 6	18	18	12.09	26.86
coral polyp · control treatment	16	16	10.75	23.45
coral polyp · oil and dispersant treatment	16	16	7.71	23.97
coral polyp · oil treatment	16	16	9.40	16.71
coral polyp · dispersant treatment	16	16	5.26	12.34
Polyp	10	9	14.11	25.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.