Gene detail

Detailed information of OS493_015700-T1 in Lophelia pertusa

Genomic Location: scaffold_47:1986390...1989448
NR annotation: KAJ7360592.1, hypothetical protein OS493_015700 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F4IZC4	Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001732 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13593 all species →	SBF_like	SBF-like CPA transporter family (DUF4137)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016833 all species →	Family	Putative sodium bile acid cotransporter	Interproscan
IPR038770 all species →	Homologous_superfamily	Sodium/solute symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18640 all species →	SOLUTE CARRIER FAMILY 10 MEMBER 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009941 all species →	Cellular Component	chloroplast envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14347	SLC10A7, P7; solute carrier family 10 (sodium/bile acid cotransporter), member 7	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015700-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

71.9Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.54	3.16
polyp at pH7 6	18	17	2.20	4.07
coral polyp · control treatment	16	16	3.76	19.93
coral polyp · oil and dispersant treatment	16	15	11.32	33.31
coral polyp · oil treatment	16	16	2.81	5.15
coral polyp · dispersant treatment	16	16	14.48	71.91
Polyp	10	9	0.98	2.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.