Gene detail

Detailed information of OS493_015718-T1 in Lophelia pertusa

Genomic Location: scaffold_47:2111244...2117904
NR annotation: KAJ7360610.1, Centrosomal protein of 76 kDa [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TAP6	Centrosomal protein of 76 kDa OS=Homo sapiens OX=9606 GN=CEP76 PE=1 SV=1
Q5RCP7	Centrosomal protein of 76 kDa OS=Pongo abelii OX=9601 GN=CEP76 PE=2 SV=1
Q0VEJ0	Centrosomal protein of 76 kDa OS=Mus musculus OX=10090 GN=Cep76 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15627 all species →	CEP76-C2	CEP76 C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR052299 all species →	Family	Centrosomal protein of 76 kDa	Interproscan
IPR028926 all species →	Domain	CEP76, C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46436 all species →	CENTROSOMAL PROTEIN OF 76 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0046599 all species →	Biological Process	regulation of centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16457	CEP76; centrosomal protein CEP76	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015718-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

6.6Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.54	5.65
polyp at pH7 6	18	18	3.18	4.13
coral polyp · control treatment	16	16	3.67	6.62
coral polyp · oil and dispersant treatment	16	16	2.63	6.60
coral polyp · oil treatment	16	16	3.35	5.17
coral polyp · dispersant treatment	16	16	2.38	4.03
Polyp	10	9	3.27	4.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.