Gene detail

Detailed information of OS493_015742-T1 in Lophelia pertusa

Genomic Location: scaffold_47:2408372...2410129
NR annotation: KAJ7360633.1, Heat shock factor-binding protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009353 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06825 all species →	HSBP1	Heat shock factor binding protein 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009643 all species →	Family	Heat shock factor binding 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19424 all species →	HEAT SHOCK FACTOR BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0070370 all species →	Biological Process	cellular heat acclimation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015742-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015742-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

227.5Max TPM

82.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	69.46	106.74
polyp at pH7 6	18	17	72.81	134.94
coral polyp · control treatment	16	16	86.29	109.00
coral polyp · oil and dispersant treatment	16	16	76.21	138.20
coral polyp · oil treatment	16	16	90.72	126.54
coral polyp · dispersant treatment	16	16	59.62	86.29
Polyp	10	9	151.66	227.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	138.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	227.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	207.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	194.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	173.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	166.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	148.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	143.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	130.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	124.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.