Gene detail

Detailed information of OS493_015800-T1 in Lophelia pertusa

Genomic Location: scaffold_48:646314...648307
NR annotation: KAJ7333717.1, Inositol monophosphatase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YDR3	Inositol monophosphatase 3 OS=Danio rerio OX=7955 GN=bpnt2 PE=2 SV=1
D4AD37	Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase OS=Rattus norvegicus OX=10116 GN=Bpnt2 PE=3 SV=1
Q80V26	Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase OS=Mus musculus OX=10090 GN=Bpnt2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459 all species →	Inositol_P	Inositol monophosphatase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050725 all species →	Family	CysQ/Inositol Monophosphatase	Interproscan
IPR000760 all species →	Family	Inositol monophosphatase-like	Interproscan
IPR020550 all species →	Conserved_site	Inositol monophosphatase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43028 all species →	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008254 all species →	Molecular Function	3'-nucleotidase activity	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15759	IMPAD1, IMPA3; Golgi-resident PAP phosphatase	EC:3.1.3.7	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015800-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.2Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.42	13.30
polyp at pH7 6	18	18	8.90	14.10
coral polyp · control treatment	16	16	12.18	27.18
coral polyp · oil and dispersant treatment	16	16	9.04	13.10
coral polyp · oil treatment	16	16	9.83	17.77
coral polyp · dispersant treatment	16	16	6.72	12.80
Polyp	10	9	5.75	9.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.