Gene detail

Detailed information of OS493_015812-T1 in Lophelia pertusa

Genomic Location: scaffold_48:797928...801217
NR annotation: KAJ7333726.1, hypothetical protein OS493_015812 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8T0	Inositol oxygenase OS=Danio rerio OX=7955 GN=miox PE=2 SV=1
A7MBE4	Inositol oxygenase OS=Bos taurus OX=9913 GN=MIOX PE=2 SV=1
Q8WN98	Inositol oxygenase OS=Sus scrofa OX=9823 GN=MIOX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005391 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05153 all species →	MIOX	Myo-inositol oxygenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007828 all species →	Family	Inositol oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12588 all species →	MYOINOSITOL OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019310 all species →	Biological Process	inositol catabolic process	Interproscan
GO:0050113 all species →	Molecular Function	inositol oxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015812-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015812-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

411.3Max TPM

100.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.03	68.91
polyp at pH7 6	18	18	47.87	82.64
coral polyp · control treatment	16	16	112.13	173.30
coral polyp · oil and dispersant treatment	16	16	221.44	411.29
coral polyp · oil treatment	16	16	106.29	185.68
coral polyp · dispersant treatment	16	16	112.67	380.74
Polyp	10	10	57.65	89.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	171.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	411.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	357.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	341.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	321.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	292.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	245.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	218.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	192.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	192.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	185.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.06
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	380.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	168.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	89.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	86.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	76.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	74.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	67.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	59.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	35.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	33.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.