Gene detail

Detailed information of OS493_015820-T1 in Lophelia pertusa

Genomic Location: scaffold_48:927410...932112
NR annotation: KAJ7333733.1, Transport and Golgi organization protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54797	Transport and Golgi organization 2 homolog OS=Mus musculus OX=10090 GN=Tango2 PE=1 SV=2
Q6ICL3	Transport and Golgi organization protein 2 homolog OS=Homo sapiens OX=9606 GN=TANGO2 PE=1 SV=1
Q29RZ5	Transport and Golgi organization protein 2 homolog OS=Bos taurus OX=9913 GN=TANGO2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002353 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05742 all species →	TANGO2	Transport and Golgi organisation 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008551 all species →	Family	Transport and Golgi organisation protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17985 all species →	SER/THR-RICH PROTEIN T10 IN DGCR REGION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015820-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015820-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

84.6Max TPM

22.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.24	29.60
polyp at pH7 6	18	18	20.18	40.25
coral polyp · control treatment	16	16	28.40	59.20
coral polyp · oil and dispersant treatment	16	16	34.31	84.61
coral polyp · oil treatment	16	16	23.01	37.68
coral polyp · dispersant treatment	16	16	13.46	31.16
Polyp	10	10	23.22	38.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.