Gene detail

Detailed information of OS493_015838-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1082115...1088886
NR annotation: KAJ7333750.1, hypothetical protein OS493_015838 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9A8Z4	Putative aldolase class 2 protein CC_1201 OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=CC_1201 PE=3 SV=2
Q20952	Adducin-related protein 2 OS=Caenorhabditis elegans OX=6239 GN=add-2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004653 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00596 all species →	Aldolase_II	Class II Aldolase and Adducin N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051017 all species →	Family	Aldolase class II Adducin subfamily	Interproscan
IPR001303 all species →	Domain	Class II aldolase/adducin N-terminal	Interproscan
IPR036409 all species →	Homologous_superfamily	Class II aldolase/adducin N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10672 all species →	ADDUCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015838-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015838-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.5Max TPM

21.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.36	24.39
polyp at pH7 6	18	18	20.16	24.97
coral polyp · control treatment	16	16	29.30	47.50
coral polyp · oil and dispersant treatment	16	16	20.36	32.58
coral polyp · oil treatment	16	16	25.65	42.68
coral polyp · dispersant treatment	16	16	18.62	28.95
Polyp	10	10	13.78	20.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.