Gene detail

Detailed information of OS493_015841-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1098931...1111441
NR annotation: KAJ7333752.1, Regulator of telomere elongation helicase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZ71	Regulator of telomere elongation helicase 1 OS=Homo sapiens OX=9606 GN=RTEL1 PE=1 SV=2
A4K436	Regulator of telomere elongation helicase 1 OS=Bos taurus OX=9913 GN=RTEL1 PE=2 SV=1
Q5RE34	Regulator of telomere elongation helicase 1 OS=Pongo abelii OX=9601 GN=RTEL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001317 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010569 all species →	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0045910 all species →	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0070182 all species →	Molecular Function	DNA polymerase binding	Interproscan
GO:0090657 all species →	Biological Process	telomeric loop disassembly	Interproscan
GO:1904430 all species →	Biological Process	negative regulation of t-circle formation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015841-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_015841-T1 global co-expression network