Gene detail

Detailed information of OS493_015845-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1132976...1138334
NR annotation: KAJ7333755.1, 40S ribosomal protein S21 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YQ2	Small ribosomal subunit protein eS21 OS=Ictalurus punctatus OX=7998 GN=rps21 PE=3 SV=1
P05765	Small ribosomal subunit protein eS21 OS=Rattus norvegicus OX=10116 GN=Rps21 PE=1 SV=1
Q32PB8	Small ribosomal subunit protein eS21 OS=Bos taurus OX=9913 GN=RPS21 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009704 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01249 all species →	Ribosomal_S21e	Ribosomal protein S21e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001931 all species →	Family	Small ribosomal subunit protein eS21	Interproscan
IPR038579 all species →	Homologous_superfamily	Small ribosomal subunit protein eS21 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10442 all species →	40S RIBOSOMAL PROTEIN S21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000461 all species →	Biological Process	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02971	RP-S21e, RPS21; small subunit ribosomal protein S21e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_015845-T1 global co-expression network