Gene detail

Detailed information of OS493_015854-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1218793...1222718
NR annotation: KAJ7333763.1, Microtubule-associated protein RP/EB member 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPY8	Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens OX=9606 GN=MAPRE3 PE=1 SV=1
Q6PER3	Microtubule-associated protein RP/EB family member 3 OS=Mus musculus OX=10090 GN=Mapre3 PE=1 SV=1
Q5XIT1	Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus OX=10116 GN=Mapre3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006908 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03271 all species →	EB1	EB1-like C-terminal motif	Family	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004953 all species →	Domain	EB1, C-terminal	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR027328 all species →	Family	Microtubule-associated protein RP/EB	Interproscan
IPR036133 all species →	Homologous_superfamily	EB1, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10623 all species →	MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0035372 all species →	Biological Process	protein localization to microtubule	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051233 all species →	Cellular Component	spindle midzone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015854-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_015854-T1 global co-expression network