Gene detail

Detailed information of OS493_015855-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1224909...1230356
NR annotation: KAJ7333764.1, hypothetical protein OS493_015855 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR033308 all species →	Family	PGAP5/Cdc1/Ted1	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13315 all species →	METALLO PHOSPHOESTERASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015855-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015855-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

39.4Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.57	12.51
polyp at pH7 6	18	18	8.49	15.98
coral polyp · control treatment	16	16	23.59	30.81
coral polyp · oil and dispersant treatment	16	16	20.28	39.41
coral polyp · oil treatment	16	16	22.15	36.76
coral polyp · dispersant treatment	16	16	12.60	21.76
Polyp	10	9	12.76	25.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.