Gene detail

Detailed information of OS493_015875-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1393289...1393778
NR annotation: KAJ7333784.1, Dynein light chain 1, cytoplasmic [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHR3	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1
Q96FJ2	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1
Q9D0M5	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002757 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01221 all species →	Dynein_light	Dynein light chain type 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001372 all species →	Family	Dynein light chain, type 1/2	Interproscan
IPR037177 all species →	Homologous_superfamily	Dynein light chain superfamily	Interproscan
IPR019763 all species →	Conserved_site	Dynein light chain, type 1/2, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11886 all species →	DYNEIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10418	DYNLL; dynein light chain LC8-type	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015875-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,451.3Max TPM

578.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	655.15	1,080.26
polyp at pH7 6	18	18	624.35	804.25
coral polyp · control treatment	16	16	540.27	753.21
coral polyp · oil and dispersant treatment	16	16	432.19	666.07
coral polyp · oil treatment	16	16	561.47	765.59
coral polyp · dispersant treatment	16	16	486.86	1,201.29
Polyp	10	10	822.94	1,451.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,080.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,067.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	764.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	737.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	629.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	627.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	623.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	621.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	599.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	598.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	595.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	586.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	576.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	574.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	535.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	534.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	519.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	518.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	804.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	791.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	710.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	688.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	642.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	625.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	623.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	622.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	621.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	617.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	616.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	604.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	593.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	587.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	534.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	522.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	515.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	514.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	753.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	689.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	668.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	664.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	603.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	587.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	586.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	573.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	563.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	556.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	555.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	535.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	359.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	349.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	303.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	294.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	666.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	607.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	569.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	565.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	547.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	495.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	463.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	451.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	382.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	364.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	327.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	322.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	310.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	285.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	281.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	272.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	765.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	658.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	650.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	646.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	630.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	623.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	614.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	601.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	570.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	564.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	509.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	506.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	501.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	421.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	394.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	323.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,201.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	816.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	579.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	518.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	501.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	459.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	446.12
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	445.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	433.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	420.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	381.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	364.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	352.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	337.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	303.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	229.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,451.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1,231.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,109.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	894.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	874.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	796.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	523.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	483.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	481.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	384.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.