Gene detail

Detailed information of OS493_015881-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1429176...1431431
NR annotation: KAJ7333790.1, PRKR-interacting protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28IN9	PRKR-interacting protein 1 homolog OS=Xenopus tropicalis OX=8364 GN=prkrip1 PE=2 SV=1
Q6GNG8	PRKR-interacting protein 1 homolog OS=Xenopus laevis OX=8355 GN=prkrip1 PE=2 SV=1
Q568A0	PRKR-interacting protein 1 homolog OS=Danio rerio OX=7955 GN=prkrip1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007737 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06658 all species →	DUF1168	Protein of unknown function (DUF1168)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009548 all species →	Family	PRKR-interacting protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13507 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0004860 all species →	Molecular Function	protein kinase inhibitor activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26159	PRKRIP1; PRKR-interacting protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015881-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

56.0Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.86	18.82
polyp at pH7 6	18	16	9.69	32.07
coral polyp · control treatment	16	16	13.23	31.81
coral polyp · oil and dispersant treatment	16	16	10.75	56.04
coral polyp · oil treatment	16	16	11.51	17.43
coral polyp · dispersant treatment	16	15	3.98	9.20
Polyp	10	10	8.66	20.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.68

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.