Gene detail

Detailed information of OS493_015894-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1594063...1597485
NR annotation: KAJ7333802.1, hypothetical protein OS493_015894 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZL5	GPI-anchor transamidase component PIGS OS=Bos taurus OX=9913 GN=PIGS PE=2 SV=3
Q96S52	GPI-anchor transamidase component PIGS OS=Homo sapiens OX=9606 GN=PIGS PE=1 SV=3
Q6PD26	GPI-anchor transamidase component PIGS OS=Mus musculus OX=10090 GN=Pigs PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006149 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10510 all species →	PIG-S	Phosphatidylinositol-glycan biosynthesis class S protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019540 all species →	Family	Phosphatidylinositol-glycan biosynthesis class S protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21072 all species →	GPI TRANSAMIDASE COMPONENT PIG-S	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015894-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015894-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

9.2Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.83	7.36
polyp at pH7 6	18	15	3.55	9.25
coral polyp · control treatment	16	15	1.79	3.69
coral polyp · oil and dispersant treatment	16	15	1.27	2.74
coral polyp · oil treatment	16	16	1.70	2.69
coral polyp · dispersant treatment	16	14	0.74	1.58
Polyp	10	9	2.83	5.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.