Gene detail

Detailed information of OS493_015901-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1664046...1671101
NR annotation: KAJ7333809.1, hypothetical protein OS493_015901 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4QMZ7	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=apaH PE=3 SV=1
A3N0C2	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) OX=416269 GN=apaH PE=3 SV=1
B3GXJ7	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) OX=537457 GN=apaH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010339 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR050126 all species →	Family	Diadenosine polyphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42850 all species →	METALLOPHOSPHOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000298 all species →	Molecular Function	endopolyphosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006798 all species →	Biological Process	polyphosphate catabolic process	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015901-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015901-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

45.0Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.88	7.98
polyp at pH7 6	18	18	4.03	10.14
coral polyp · control treatment	16	16	7.24	30.90
coral polyp · oil and dispersant treatment	16	16	6.76	45.04
coral polyp · oil treatment	16	16	4.82	9.86
coral polyp · dispersant treatment	16	16	2.76	6.29
Polyp	10	10	5.06	15.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.