Detailed information of OS493_015902-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1671485...1680740
NR annotation: KAJ7333810.1, 39S ribosomal protein L44, mitochondrial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007379 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →		PDZPDZ domainDomainInterproscan
PF14622
all species →		Ribonucleas_3_3Ribonuclease-III-likeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036389
all species →		Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan
IPR001478
all species →		DomainPDZ domainInterproscan
IPR000999
all species →		DomainRibonuclease III domainInterproscan
IPR036034
all species →		Homologous_superfamilyPDZ superfamilyInterproscan
IPR051109
all species →		FamilyMembrane-associated multiprotein complex regulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14063
all species →		PROTEIN LIN-7 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004525
all species →		Molecular Functionribonuclease III activityInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005911
all species →		Cellular Componentcell-cell junctionInterproscan
GO:0007269
all species →		Biological Processneurotransmitter secretionInterproscan
GO:0016323
all species →		Cellular Componentbasolateral plasma membraneInterproscan
GO:0045199
all species →		Biological Processmaintenance of epithelial cell apical/basal polarityInterproscan
GO:0045202
all species →		Cellular ComponentsynapseInterproscan
GO:1903361
all species →		Biological Processprotein localization to basolateral plasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_015902-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_015902-T1 global co-expression network
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