Gene detail

Detailed information of OS493_015903-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1683621...1684533
NR annotation: KAJ7333811.1, hypothetical protein OS493_015903 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58DH2	Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Bos taurus OX=9913 GN=PISD PE=2 SV=1
D3ZAW2	Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pisd PE=1 SV=3
Q8BSF4	Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Mus musculus OX=10090 GN=Pisd PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003552 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02666 all species →	PS_Dcarbxylase	Phosphatidylserine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003817 all species →	Family	Phosphatidylserine decarboxylase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10067 all species →	PHOSPHATIDYLSERINE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004609 all species →	Molecular Function	phosphatidylserine decarboxylase activity	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006646 all species →	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015903-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015903-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

44.6Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.87	12.29
polyp at pH7 6	18	18	11.13	19.31
coral polyp · control treatment	16	16	12.86	30.43
coral polyp · oil and dispersant treatment	16	16	16.33	26.81
coral polyp · oil treatment	16	16	9.38	14.77
coral polyp · dispersant treatment	16	16	19.87	44.56
Polyp	10	9	7.48	14.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.