Detailed information of OS493_015907-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1708027...1710429
NR annotation: KAJ7333815.1, ribosomal small subunit export from nucleus [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2CEI4Nucleoporin 88 OS=Danio rerio OX=7955 GN=nup88 PE=1 SV=1
Q8CEC0Nuclear pore complex protein Nup88 OS=Mus musculus OX=10090 GN=Nup88 PE=1 SV=1
O08658Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004306 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10168
all species →		Nup88Nuclear pore componentRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037700
all species →		FamilyNucleoporin NUP88/NUP82Interproscan
IPR019321
all species →		FamilyNucleoporin Nup88Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13257
all species →		NUCLEOPORIN NUP84-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000055
all species →		Biological Processribosomal large subunit export from nucleusInterproscan
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0005643
all species →		Cellular Componentnuclear poreInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan
GO:0006606
all species →		Biological Processprotein import into nucleusInterproscan
GO:0006913
all species →		Biological Processnucleocytoplasmic transportInterproscan
GO:0017056
all species →		Molecular Functionstructural constituent of nuclear poreInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_015907-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_015907-T1 global co-expression network
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