Gene detail

Detailed information of OS493_015913-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1787057...1788781
NR annotation: KAJ7333821.1, Flotillin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98TZ8	Flotillin-2a OS=Danio rerio OX=7955 GN=flot2a PE=2 SV=2
A6QLR4	Flotillin-2 OS=Bos taurus OX=9913 GN=FLOT2 PE=2 SV=1
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001682 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_015913-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR027705 all species →	Family	Flotillin family	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045661 all species →	Biological Process	regulation of myoblast differentiation	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015913-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015913-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

250.7Max TPM

77.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.59	78.71
polyp at pH7 6	18	18	51.65	92.82
coral polyp · control treatment	16	16	112.68	250.75
coral polyp · oil and dispersant treatment	16	16	110.05	189.48
coral polyp · oil treatment	16	16	79.42	197.51
coral polyp · dispersant treatment	16	16	98.98	209.31
Polyp	10	9	30.38	61.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	250.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	189.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	150.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	209.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	47.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	46.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	42.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.