Gene detail

Detailed information of OS493_015914-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1789776...1796714
NR annotation: KAJ7333822.1, Flotillin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61492	Flotillin-2 OS=Drosophila melanogaster OX=7227 GN=Flo2 PE=2 SV=3
Q14254	Flotillin-2 OS=Homo sapiens OX=9606 GN=FLOT2 PE=1 SV=2
Q60634	Flotillin-2 OS=Mus musculus OX=10090 GN=Flot2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001682 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15975 all species →	Flot	Flotillin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031905 all species →	Domain	Flotillin, C-terminal domain	Interproscan
IPR027705 all species →	Family	Flotillin family	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13806 all species →	FLOTILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016600 all species →	Cellular Component	flotillin complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0045661 all species →	Biological Process	regulation of myoblast differentiation	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015914-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015914-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

221.0Max TPM

101.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	89.24	122.43
polyp at pH7 6	18	18	103.40	163.03
coral polyp · control treatment	16	16	130.21	221.04
coral polyp · oil and dispersant treatment	16	16	117.74	185.98
coral polyp · oil treatment	16	16	95.61	188.22
coral polyp · dispersant treatment	16	16	93.08	204.00
Polyp	10	10	69.40	167.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.01
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	161.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	140.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	164.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	170.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	116.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	167.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	104.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	97.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	62.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	62.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	60.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	36.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.