Gene detail

Detailed information of OS493_015918-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1840589...1841760
NR annotation: KAJ7333826.1, hypothetical protein OS493_015918 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXS4	Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2
Q7Z7K6	Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004483 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04828 all species →	GFA	Glutathione-dependent formaldehyde-activating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006913 all species →	Domain	CENP-V/GFA domain	Interproscan
IPR052355 all species →	Family	Centromere protein V-like	Interproscan
IPR011057 all species →	Homologous_superfamily	Mss4-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28620 all species →	CENTROMERE PROTEIN V	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016846 all species →	Molecular Function	carbon-sulfur lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27583	CENPV; centromere protein V	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015918-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

13.1Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.98	8.88
polyp at pH7 6	18	15	4.49	8.38
coral polyp · control treatment	16	16	7.19	11.62
coral polyp · oil and dispersant treatment	16	15	3.48	7.95
coral polyp · oil treatment	16	16	7.86	13.08
coral polyp · dispersant treatment	16	16	3.48	11.94
Polyp	10	10	6.79	12.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.94

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.