Gene detail

Detailed information of OS493_015925-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1872835...1876258
NR annotation: KAJ7333833.1, hypothetical protein OS493_015925 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99MZ3	Carbohydrate-responsive element-binding protein OS=Mus musculus OX=10090 GN=Mlxipl PE=1 SV=1
Q8VIP2	Carbohydrate-responsive element-binding protein OS=Rattus norvegicus OX=10116 GN=Mlxipl PE=1 SV=1
Q9NP71	Carbohydrate-responsive element-binding protein OS=Homo sapiens OX=9606 GN=MLXIPL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR052207 all species →	Family	Max-like/E-box-binding transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15741 all species →	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015925-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015925-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.4Max TPM

11.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.81	18.63
polyp at pH7 6	18	18	11.36	17.64
coral polyp · control treatment	16	16	13.34	26.14
coral polyp · oil and dispersant treatment	16	16	11.78	30.38
coral polyp · oil treatment	16	16	12.29	16.61
coral polyp · dispersant treatment	16	16	9.22	15.64
Polyp	10	9	5.79	9.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.