Gene detail

Detailed information of OS493_015926-T1 in Lophelia pertusa

Genomic Location: scaffold_48:1876266...1887844
NR annotation: KAJ7333834.1, carbohydrate response element binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2VPU4	MLX-interacting protein OS=Mus musculus OX=10090 GN=Mlxip PE=1 SV=1
Q9HAP2	MLX-interacting protein OS=Homo sapiens OX=9606 GN=MLXIP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006264 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_015926-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052207 all species →	Family	Max-like/E-box-binding transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15741 all species →	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015926-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015926-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

18.8Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.59	10.96
polyp at pH7 6	18	17	5.38	8.62
coral polyp · control treatment	16	16	8.26	18.80
coral polyp · oil and dispersant treatment	16	16	7.13	15.49
coral polyp · oil treatment	16	16	6.78	11.61
coral polyp · dispersant treatment	16	15	6.64	12.03
Polyp	10	9	2.61	4.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.