Gene detail

Detailed information of OS493_015999-T1 in Lophelia pertusa

Genomic Location: scaffold_48:2370185...2374257
NR annotation: KAJ7333905.1, hypothetical protein OS493_015999 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SPX1	Coiled-coil domain-containing protein 157 OS=Mus musculus OX=10090 GN=Ccdc157 PE=1 SV=1
A4IFI1	Coiled-coil domain-containing protein 157 OS=Bos taurus OX=9913 GN=CCDC157 PE=2 SV=2
Q569K6	Coiled-coil domain-containing protein 157 OS=Homo sapiens OX=9606 GN=CCDC157 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006103 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_015999-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029681 all species →	Family	Coiled-coil domain-containing protein 157	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43696 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 157	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_015999-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015999-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015999-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.8Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.76	13.17
polyp at pH7 6	18	18	6.65	11.25
coral polyp · control treatment	16	16	9.44	27.76
coral polyp · oil and dispersant treatment	16	16	7.34	17.31
coral polyp · oil treatment	16	16	9.24	12.54
coral polyp · dispersant treatment	16	16	3.52	6.57
Polyp	10	10	7.31	11.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.