Gene detail

Detailed information of OS493_016001-T1 in Lophelia pertusa

Genomic Location: scaffold_48:2381698...2382764
NR annotation: KAJ7333907.1, hypothetical protein OS493_016001 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12256	Penicillin V acylase OS=Lysinibacillus sphaericus OX=1421 PE=1 SV=1
P54965	Bile salt hydrolase/transferase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=cbh PE=1 SV=3
P0DXD2	Bile salt hydrolase/transferase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=bsh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001704 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02275 all species →	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR029132 all species →	Domain	Choloylglycine hydrolase/NAAA C-terminal	Interproscan
IPR052193 all species →	Family	Peptidase C59 family enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35527 all species →	CHOLOYLGLYCINE HYDROLASE	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_016001-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016001-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016001-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

78.2Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.37	8.85
polyp at pH7 6	18	12	1.12	4.32
coral polyp · control treatment	16	16	10.63	63.66
coral polyp · oil and dispersant treatment	16	16	6.76	28.76
coral polyp · oil treatment	16	14	6.99	22.65
coral polyp · dispersant treatment	16	15	15.66	78.20
Polyp	10	7	5.83	31.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.