Gene detail

Detailed information of OS493_016002-T1 in Lophelia pertusa

Genomic Location: scaffold_48:2413577...2414812
NR annotation: KAJ7333908.1, hypothetical protein OS493_016002 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12256	Penicillin V acylase OS=Lysinibacillus sphaericus OX=1421 PE=1 SV=1
P54965	Bile salt hydrolase/transferase OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=cbh PE=1 SV=3
A5HKP3	Conjugated bile acid hydrolase OS=Lactobacillus acidophilus OX=1579 GN=bsh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001704 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02275 all species →	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052193 all species →	Family	Peptidase C59 family enzymes	Interproscan
IPR029132 all species →	Domain	Choloylglycine hydrolase/NAAA C-terminal	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35527 all species →	CHOLOYLGLYCINE HYDROLASE	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_016002-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016002-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016002-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

129.6Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.11	18.03
polyp at pH7 6	18	13	1.29	4.84
coral polyp · control treatment	16	14	23.14	129.60
coral polyp · oil and dispersant treatment	16	15	11.77	36.97
coral polyp · oil treatment	16	15	14.39	41.06
coral polyp · dispersant treatment	16	16	26.62	125.16
Polyp	10	8	12.08	72.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	129.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	72.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.