Gene detail

Detailed information of OS493_016036-T1 in Lophelia pertusa

Genomic Location: scaffold_49:313695...317373
NR annotation: KAJ7391750.1, 39S ribosomal protein L43, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N983	Large ribosomal subunit protein mL43 OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1
Q99N89	Large ribosomal subunit protein mL43 OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1
Q95KE5	Large ribosomal subunit protein mL43 OS=Bos taurus OX=9913 GN=MRPL43 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009053 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05047 all species →	L51_S25_CI-B8	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007741 all species →	Domain	Ribosomal protein/NADH dehydrogenase domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR039927 all species →	Family	Large ribosomal subunit protein mL43	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21396 all species →	39S RIBOSOMAL PROTEIN L43	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17424	MRPL43; large subunit ribosomal protein L43	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016036-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

45.0Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.48	16.74
polyp at pH7 6	18	18	10.42	16.15
coral polyp · control treatment	16	16	13.82	40.23
coral polyp · oil and dispersant treatment	16	16	9.80	45.04
coral polyp · oil treatment	16	16	11.91	23.23
coral polyp · dispersant treatment	16	16	6.25	17.21
Polyp	10	10	8.42	19.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.88

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.