Gene detail

Detailed information of OS493_016093-T1 in Lophelia pertusa

Genomic Location: scaffold_49:743842...744939
NR annotation: KAJ7391805.1, hypothetical protein OS493_016093 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NHR7	Telomere repeats-binding bouquet formation protein 2 OS=Homo sapiens OX=9606 GN=TERB2 PE=1 SV=1
Q2M2T9	Telomere repeats-binding bouquet formation protein 2 OS=Bos taurus OX=9913 GN=TERB2 PE=2 SV=1
Q9D494	Telomere repeats-binding bouquet formation protein 2 OS=Mus musculus OX=10090 GN=Terb2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008300 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15101 all species →	TERB2	Telomere-associated protein TERB2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028065 all species →	Family	Telomere repeats-binding bouquet formation protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35345 all species →	TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005637 all species →	Cellular Component	nuclear inner membrane	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0070197 all species →	Biological Process	meiotic attachment of telomere to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016093-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016093-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

81.4Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.77	3.28
polyp at pH7 6	18	18	1.74	3.11
coral polyp · control treatment	16	16	6.76	81.39
coral polyp · oil and dispersant treatment	16	16	5.84	71.61
coral polyp · oil treatment	16	16	1.27	2.12
coral polyp · dispersant treatment	16	16	0.74	1.74
Polyp	10	10	2.40	4.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.