Gene detail

Detailed information of OS493_016109-T1 in Lophelia pertusa

Genomic Location: scaffold_49:920029...921278
NR annotation: KAJ7391820.1, hypothetical protein OS493_016109 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IP73	Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis OX=8355 GN=naca PE=2 SV=1
Q68F90	Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis OX=8364 GN=naca PE=2 SV=1
Q5E9A1	Nascent polypeptide-associated complex subunit alpha OS=Bos taurus OX=9913 GN=NACA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006878 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_016109-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR016641 all species →	Family	Nascent polypeptide-associated complex subunit alpha-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21713 all species →	NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005854 all species →	Cellular Component	nascent polypeptide-associated complex	Interproscan
GO:0006612 all species →	Biological Process	protein targeting to membrane	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016109-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016109-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,985.0Max TPM

833.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1,210.80	1,800.26
polyp at pH7 6	18	18	1,153.18	1,573.08
coral polyp · control treatment	16	16	607.12	1,221.77
coral polyp · oil and dispersant treatment	16	16	525.75	892.34
coral polyp · oil treatment	16	16	676.67	1,201.94
coral polyp · dispersant treatment	16	16	490.94	1,355.87
Polyp	10	10	1,234.16	1,985.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,800.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,754.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,542.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,522.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,299.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,289.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,194.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,184.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,135.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,122.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,120.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,076.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,022.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	966.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	952.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	952.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	929.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	928.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,573.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,544.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,542.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,515.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,193.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,172.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,146.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,090.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,076.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,059.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,057.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,045.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	988.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	964.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	961.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	956.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	936.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	933.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,221.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	918.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	757.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	734.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	734.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	661.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	656.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	628.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	591.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	575.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	454.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	423.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	398.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	394.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	322.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	239.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	892.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	809.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	683.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	603.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	589.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	560.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	543.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	533.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	502.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	481.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	402.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	399.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	391.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	375.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	325.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	318.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,201.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	958.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	943.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	883.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	733.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	727.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	664.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	620.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	594.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	588.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	585.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	556.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	538.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	499.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	395.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	333.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,355.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,347.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	528.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	497.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	470.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	417.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	393.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	365.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	356.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	351.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	346.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	345.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	309.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	215.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1,985.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,594.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1,464.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1,439.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,403.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,251.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,197.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	742.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	640.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	623.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.