Gene detail

Detailed information of OS493_016112-T1 in Lophelia pertusa

Genomic Location: scaffold_49:938312...939214
NR annotation: KAJ7391823.1, hypothetical protein OS493_016112 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SG73	Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment) OS=Nematostella vectensis OX=45351 GN=qprt PE=3 SV=1
I3LK75	Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Sus scrofa OX=9823 GN=QPRT PE=1 SV=2
Q3T063	Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Bos taurus OX=9913 GN=QPRT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01729 all species →	QRPTase_C	Quinolinate phosphoribosyl transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036068 all species →	Homologous_superfamily	Nicotinate phosphoribosyltransferase-like, C-terminal	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR027277 all species →	Family	Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD	Interproscan
IPR002638 all species →	Domain	Quinolinate phosphoribosyl transferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32179 all species →	NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING]	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan
GO:0004514 all species →	Molecular Function	nicotinate-nucleotide diphosphorylase (carboxylating) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034213 all species →	Biological Process	quinolinate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016112-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016112-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

7.2Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	1.34	4.15
polyp at pH7 6	18	14	1.49	2.46
coral polyp · control treatment	16	16	2.71	7.16
coral polyp · oil and dispersant treatment	16	16	1.48	3.97
coral polyp · oil treatment	16	15	2.00	4.27
coral polyp · dispersant treatment	16	16	1.48	4.03
Polyp	10	9	2.21	4.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.