Gene detail

Detailed information of OS493_016123-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1028923...1038579
NR annotation: KAJ7391833.1, hypothetical protein OS493_016123 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NWU1	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens OX=9606 GN=OXSM PE=1 SV=1
Q0VCA7	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus OX=9913 GN=OXSM PE=2 SV=1
Q9D404	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus musculus OX=10090 GN=Oxsm PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02801 all species →	Ketoacyl-synt_C	Beta-ketoacyl synthase, C-terminal domain	Domain	Interproscan
PF00109 all species →	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000794 all species →	Family	Beta-ketoacyl synthase	Interproscan
IPR018201 all species →	Active_site	Beta-ketoacyl synthase, active site	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR014031 all species →	Domain	Beta-ketoacyl synthase, C-terminal	Interproscan
IPR014030 all species →	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan
IPR017568 all species →	Family	3-oxoacyl-[acyl-carrier-protein] synthase 2	Interproscan
IPR020841 all species →	Domain	Polyketide synthase, beta-ketoacyl synthase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11712 all species →	POLYKETIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004315 all species →	Molecular Function	3-oxoacyl-[acyl-carrier-protein] synthase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09458	fabF, OXSM, CEM1; 3-oxoacyl-[acyl-carrier-protein] synthase II	EC:2.3.1.179	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016123-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

5.2Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.14	3.30
polyp at pH7 6	18	14	1.70	3.12
coral polyp · control treatment	16	16	1.93	4.66
coral polyp · oil and dispersant treatment	16	16	1.23	3.02
coral polyp · oil treatment	16	16	1.92	3.51
coral polyp · dispersant treatment	16	16	1.59	4.50
Polyp	10	9	2.85	5.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.